PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013592069.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARF
Protein Properties Length: 777aa    MW: 87012.4 Da    PI: 6.3612
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013592069.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.91.9e-23127227198
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_013592069.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldytQQPPAQ--ELIAKDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVTGDSVIFI--RNE 217
                     99*****************************96555555..8************************************************..457 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                     + +l+++++ 
  XP_013592069.1 218 RNQLLLGIRH 227
                     7777988876 PP

2Auxin_resp106.92.3e-35253336183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+v+Y+Pr+s+seFv ++ k+ ka+  +++svGmRf+m fete+ss rr++Gt++g+ dld+v WpnS+Wrs+k
  XP_013592069.1 253 AAHAAATNSCFTVFYHPRSSSSEFVLPLPKYIKAVFhTRISVGMRFRMLFETEESSVRRYMGTITGIGDLDSVLWPNSHWRSVK 336
                     79*******************************986599******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.49E-48113256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.3E-41120242IPR015300DNA-binding pseudobarrel domain
CDDcd100173.07E-21126219No hitNo description
PROSITE profilePS5086312.182127229IPR003340B3 DNA binding domain
SMARTSM010194.0E-22127229IPR003340B3 DNA binding domain
PfamPF023623.6E-21127227IPR003340B3 DNA binding domain
PfamPF065072.9E-31253336IPR010525Auxin response factor
PfamPF023095.6E-8668760IPR033389AUX/IAA domain
SuperFamilySSF542771.11E-7672751No hitNo description
PROSITE profilePS5174522.409676760IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 777 aa     Download sequence    Send to blast
MNLSSSGFGH QSHEGEKKCL NSELWHACAG PLVSLPSSGS RVVYFPQGHS EQVAATTNKE  60
VEGHIPNYPT LPPQLICQLH NVTMHADLET DEVYAQMVLQ PLTQEEQKDT FVPIELGIPS  120
KQPSNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYTQ QPPAQELIAK DLHDNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVTGDS VIFIRNERNQ LLLGIRHATR PQTIVPSSML  240
SSDSMHIGLL AAAAHAAATN SCFTVFYHPR SSSSEFVLPL PKYIKAVFHT RISVGMRFRM  300
LFETEESSVR RYMGTITGIG DLDSVLWPNS HWRSVKVGWD ESTAGERQAR ASLWEIEPLT  360
TFPMYPSLFP LRLKRPWHPG ASSFQDSRGD LTWLRGGAGE NGLLPLNYPS PNVFPWMQQR  420
LDLLGTDQNQ QYQAMLAAGL QLNFGGGGGD PLRQQFVHLQ EPNHQYLQQQ SAPIIHNSDL  480
QQHHQQQQMP RHLLQAQPQI LTENIPQQNM SQEVSNQAQQ PDRVWQHSDL LSPSDFTNKF  540
TSAASNPVQQ QNLTLQGSGD SSSHLLNFSI TGQSEQLPTQ DWSLKHSHHP ETNYFSEPLS  600
LGQAYGRASP SSLEPPPSTQ NLSLFGVDSD SGLFLPTTVP RFGGDTSSMP LADSGFQNNL  660
QETTELAAHG VVEHTNNFVK VYKSGSVGRS LDISRFSSYN ELREELGKMF DIRGLLEDAF  720
RSGWQLVFVD KEDDILLLGD DPWESFVNSV WYIKILSPDD VHKMGEHGSF PQNLTHF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1521635747388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9794710.0JN979471.1 Brassica rapa subsp. pekinensis auxin response factor 8-1 (ARF8-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013592069.10.0PREDICTED: auxin response factor 8-like
RefseqXP_013592070.10.0PREDICTED: auxin response factor 8-like
SwissprotQ9FGV10.0ARFH_ARATH; Auxin response factor 8
TrEMBLA0A0D3CY880.0A0A0D3CY88_BRAOL; Auxin response factor
STRINGBra004125.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13442894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0auxin response factor 8